Table 2 Summary of LAMP-sequencing results.

The cross tabulation of RT-qPCR and RT-LAMP assay results shown in Table 1 have been split into samples where sequencing of RT-LAMP reaction products (LAMP-sequencing) was positive (Pos), negative (Neg), or inconclusive (too few reads) (see also Fig. 4).

RT-LAMP
CTPosNegSum
LAMP-
sequencing
PosRT-qPCRPos0–2549049
25–3028028
30–35404
35–40000
NegNeg000
NegRT-qPCRPos0–25000
25–30022
30–3501616
35–4001616
NegNeg2637639
Too few readsRT-qPCRPos0–25202
25–30000
30–35000
35–40000
NegNeg01212
Sum85683768