Table 2. Validation data sets that matched inclusion criteria and have a single known pathogen type (viral or bacterial).

DHF, dengue hemorrhagic fever; DSS, dengue shock syndrome.

AccessionAuthorTissuePlatformDemographicSpecific
pathogens
Number
healthy
Number
bacterial
Number
viral
E-MEXP-3567IrwinWhole
blood
GPL96Malawian children with
bacterial meningitis or
pneumonia
S. pneumoniae,
Neisseria meningitidis,
or Haemophilus
influenzae
3120
GSE11755EmontsWhole
blood
GPL570Children in PICU with
meningococcal sepsis
N. meningitidis360
GSE13015PanklaWhole
blood
GPL6106Adults with bacterial sepsisBurkholderia pseudomallei
and others
10450
GPL694710150
GSE22098BerryWhole
blood
GPL6947Children with Gram-positive
infections
Staphylococcus and
Streptococcus
81520
GSE28750SutherlandWhole
blood
GPL570Adults with community-acquired
bacterial sepsis
Multiple bacteria20100
GSE29161ThunyWhole
blood
GPL6480Adults with native valve-infected
endocarditis
Staphylococcus and
Streptococcus
550
GSE33341AhnWhole
blood
GPl571Adults with septic
bloodstream infections
S. aureus or E. coli43510
GSE40586LillWhole
blood
GPL6244Bacterial meningitisMultiple bacteria18210
GSE42834BloomWhole
blood
GPL10558Bacterial pneumoniaUnknown118190
GSE57065CazalisWhole
blood
GPL570Adults with bacterial
septic shock
Multiple bacteria25820
GSE69528ConejeroWhole
blood
GPL10558Adults with
bacterial sepsis
B. pseudomallei and others55830
E-MTAB-3162van de WegWhole
blood
GPL570Indonesian patients >14 years old with
uncomplicated and severe dengue
Dengue15030
GSE17156ZaasWhole
blood
GPL571Volunteers with viral
challenge peak symptoms
Influenza, RSV, rhinovirus56027
GSE21802Bermejo-MartinWhole
blood
GPL6102Adults with
septic influenza
Influenza (H1N1)4012
GSE27131BerdalWhole
blood
GPL6244Adults with septic influenza with
mechanical ventilation
Influenza (H1N1)707
GSE38900MejiasWhole
blood
GPL10558Children with acute LRTIRSV8028
GPL6884Influenza, RSV, rhinovirus310153
GSE51808KwissaWhole
blood
GPL13158Children and adults with
uncomplicated dengue
and DHF
Dengue9028
GSE68310ZhaiWhole
blood
GPL10558Adults with ARIsMostly influenza
and rhinovirus
2430211
GSE16129ArduraPBMCGPL6106Children with invasive
staph infections
S. aureus990
GPL9610460
GSE23140LiuPBMCGPL6254Children with acute otitis mediaS. pneumoniae440
GSE34205IoannidisPBMCGPL570Infants and children with ARIsInfluenza, RSV22079
GSE38246PopperPBMCGPL15615Nicaraguan children with un
complicated dengue, DHF, and DSS
Dengue8095
GSE69606BrandPBMCGPL570Children with mild-to-severe RSVRSV17026