Table 4

Accuracy of (A) type α and (B) type β SNP classification (from pter to qter).

ChromosomeSingle-block classificationConsecutive-block algorithm
Correct (%)Incorrect (%)TotalCorrect (%)Incorrect (%)Total
A
1314 (99.1%)3 (0.9%)317309 (100%)0 (0.0%)309
2305 (99.3%)2 (0.7%)307301 (100%)0 (0.0%)301
3240 (99.6%)1 (0.4%)241237 (100%)0 (0.0%)237
4218 (99.5%)1 (0.5%)219215 (100%)0 (0.0%)215
5203 (100%)0 (0.0%)203201 (100%)0 (0.0%)201
6240 (98.0%)5 (2.0%)245237 (98.8%)3 (1.3%)240
7182 (98.9%)2 (1.1%)184179 (100%)0 (0.0%)179
8217 (99.5%)1 (0.5%)218214 (100%)0 (0.0%)214
9177 (99.4%)1 (0.6%)178174 (100%)0 (0.0%)174
10217 (99.1%)2 (0.9%)219213 (100%)0 (0.0%)213
11205 (100%)0 (0.0%)205203 (100%)0 (0.0%)203
12193 (99.5%)1 (0.5%)194190 (100%)0 (0.0%)190
13133 (100%)0 (0.0%)133132 (100%)0 (0.0%)132
14125 (100%)0 (0.0%)125124 (100%)0 (0.0%)124
15103 (100%)0 (0.0%)103102 (100%)0 (0.0%)102
16133 (98.5%)2 (1.5%)135129 (100%)0 (0.0%)129
17104 (100%)0 (0.0%)104102 (100%)0 (0.0%)102
1895 (97.9%)2 (2.1%)9791 (100%)0 (0.0%)91
1967 (100%)0 (0.0%)6765 (100%)0 (0.0%)65
20112 (100%)0 (0.0%)112110 (100%)0 (0.0%)110
2160 (100%)0 (0.0%)6059 (100%)0 (0.0%)59
2239 (100%)0 (0.0%)3938 (100%)0 (0.0%)38
X156 (98.7%)2 (1.3%)158152 (100%)0 (0.0%)152
Total3838 (99.4%)25 (0.6%)38633777 (99.9%)3 (0.08%)3,780
B
1267 (98.2%)5 (1.8%)272262 (100%)0 (0.0%)262
2283 (99.0%)3 (1.0%)286278 (100%)0 (0.0%)278
3222 (98.2%)4 (1.8%)226216 (100%)0 (0.0%)216
4175 (98.9%)2 (1.1%)177171 (100%)0 (0.0%)171
5255 (99.6%)1 (0.4%)256252 (100%)0 (0.0%)252
6195 (99.0%)2 (1.0%)197192 (100%)0 (0.0%)192
7155 (97.5%)4 (2.5%)159150 (100%)0 (0.0%)150
8211 (100%)0 (0.0%)211209 (100%)0 (0.0%)209
9162 (99.4%)1 (0.6%)163160 (100%)0 (0.0%)160
10172 (96.6%)6 (3.4%)178167 (98.2%)3 (1.8%)170
11171 (99.4%)1 (0.6%)172168 (100%)0 (0.0%)168
12156 (99.4%)1 (0.6%)157153 (100%)0 (0.0%)153
13119 (98.3%)2 (1.7%)121117 (99.2%)1 (0.8%)118
14116 (98.3%)2 (1.7%)118115 (99.1%)1 (0.9%)116
15101 (100%)0 (0.0%)101100 (100%)0 (0.0%)100
16115 (94.3%)7 (5.7%)122107 (99.1%)1 (0.9%)108
1767 (98.5%)1 (1.5%)6865 (100%)0 (0.0%)65
1892 (100%)0 (0.0%)9290 (100%)0 (0.0%)90
1957 (100%)0 (0.0%)5755 (100%)0 (0.0%)55
2095 (100%)0 (0.0%)9593 (100%)0 (0.0%)93
2139 (100%)0 (0.0%)3938 (100%)0 (0.0%)38
2259 (100%)0 (0.0%)5958 (100%)0 (0.0%)58
X142 (99.3%)1 (0.7%)143139 (100%)0 (0.0%)139
Total3426 (98.8%)43 (1.2%)34693355 (99.8%)6 (0.18%)3361