Table 3

SPRT classification process for RHDO analysis of type β SNPs in a region close to the pter of chromosome 1.

SNP IDGenomic locationCounts
for the
allele on
Hap I
Counts
for the
allele on
Hap II
Cumulative
count for
alleles on
Hap I
Cumulative
count for
alleles on
Hap II
Total
no. of
reads
Fraction of
total reads
contributed
by Hap I
alleles
SPRT
classification
result
rs7519837150066424262426500.4800Unclassified
rs109071871748914373161571180.5169Unclassified
rs12402876177306146501071072140.5000Unclassified
rs13303344193826047321541392930.5256Unclassified
rs385039206726940331941723660.5301Unclassified
rs262641209484130342242064300.5209Unclassified
rs626479210012027382512444950.5071Unclassified
rs7527871227158622202732645370.5084Unclassified
rs2840528227375644393173036200.5113Unclassified
rs7545940228948747573643607240.5028Unclassified
rs10910061229337229563934168090.4858Unclassified
rs12404555229808444544374709070.4818Unclassified
rs3736330231693542404795109890.4843Unclassified
rs28405322317675101748952710160.4813Unclassified
rs21246612779766555254457911230.4844Unclassified
rs27426733069879504059461912130.4897Unclassified
rs17982463070715223561665412700.4850Unclassified
rs17365223070800343065068413340.4873Unclassified
rs107973833102277364568672914150.4848Unclassified
rs46484623155127342272075114710.4895Unclassified
rs46484783241867465076680115670.4888Unclassified
rs75523313243801493981584016550.4924Hap I