Table 2

SPRT classification process for RHDO analysis of type α SNPs in a region close to the pter of chromosome 1.

SNP IDGenomic
location
Counts
for the
allele on
Hap I
Counts
for the
allele on
Hap II
Cumulative
count for
alleles on
Hap I
Cumulative
count for
alleles on
Hap II
Total
no. of reads
Fraction of
total reads
contributed
by Hap I
alleles
SPRT
classification
result
rs298030077585228482848760.3684Unclassified
rs112605541119535211549631120.4375Unclassified
rs109071751120590402489871760.5057Unclassified
rs2887286114599446431351302650.5094Unclassified
rs38131991148140101702362004360.5413Unclassified
rs6603785117636562422982425400.5519Unclassified
rs12563338118848129233272655920.5524Unclassified
rs6685064120115529173562826380.5580Unclassified
rs6603788120794957634133457580.5449Unclassified
rs2274264123233148444613898500.5424Unclassified
rs819976141139427324884219090.5369Unclassified
rs909823163754639425274639900.5323Unclassified
rs22729081711339627258953511240.5240Unclassified
rs46488072030758383462756911960.5242Unclassified
rs37532422059541614268861112990.5296Unclassified
rs22571822072426423773064813780.5298Unclassified
rs1208473621794405335783683146605341Unclassified
rs1204569321954414043823726154905313Unclassified
rs28431302273173523787576316380.5342Unclassified
rs28405312276268292690478916930.5340Unclassified
rs19987592387034322893681717530.5339Unclassified
rs8976322816023574299385918520.5362Unclassified
rs89763528361344337103689619320.5362Unclassified
rs260641428570085550109194620370.5356Unclassified
rs284293328578213831112997721060.5361Unclassified
rs16823459310481275581204103522390.5377Unclassified
rs13328662311401581491285108423690.5424Hap I