Supplementary Materials

The PDF file includes:

  • Figure S1. Clinical scores, gross lung lesions and viral loads in respiratory and gastrointestinal tract of African green monkeys inoculated with SARS-CoV-2.
  • Figure S2. Histological changes in intestinal tract and lymph nodes of African green monkeys infected with SARS-CoV-2.
  • Figure S3. Percentage of cell types in the lung determined by single cell RNA sequencing.
  • Figure S4. Coverage of reads from the pseudo-bulk data across the SARS-CoV-2 genome.
  • Figure S5. Clustering bias across cell populations in the lungs.
  • Figure S6. Gene set enrichment analysis of macrophages across the principal components.
  • Figure S7. Comparison of different cell populations in the mediastinal lymph node.
  • Figure S8. Analysis of T cell populations in lung and mediastinal lymph node.
  • Table S1. Virus isolation from tissues of African green monkeys inoculated with SARS-CoV-2 and euthanized at 3 and 10 days post inoculation.

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Other Supplementary Material for this manuscript includes the following: