Supplementary Materials

The PDF file includes:

  • Fig. S1: Data overview.
  • Fig. S2. Technical pipeline and controls.
  • Fig. S3. Phylogenetic analysis of SARS-CoV-2 sequences from Austrian COVID-19 patients in global context.
  • Fig. S4: Bottleneck size estimations.
  • Fig. S5: Viral intra-host diversity in individual patients.

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Other Supplementary Material for this manuscript includes the following:

  • Data File S1. Sample and sequencing information of the 572 samples and the controls.
  • Data File S2. Acknowledgements for SARS-CoV-2 genome sequences derived from GISAID.
  • Data File S3. Epidemiological clusters referred to in this study.
  • Data File S4. Transmission chain and sample information for ClusterA/ClusterAL and family-related cases.
  • Data File S5. Clinical information of patients with COVID-19 relating to Fig 5 and fig S5.