Research ArticleCancer

High-throughput sequencing of the T cell receptor β gene identifies aggressive early-stage mycosis fungoides

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Science Translational Medicine  09 May 2018:
Vol. 10, Issue 440, eaar5894
DOI: 10.1126/scitranslmed.aar5894

Predicting progression in a T cell lymphoma

Mycosis fungoides (MF) is an often indolent cutaneous T cell lymphoma identifiable by the T cell receptor gene TCRB in skin biopsies. de Masson et al. performed high-throughput sequencing of MF skin lesions to determine whether the frequency of the most abundant TCRB sequence could predict the fraction of cases that progress to more aggressive disease. This tumor clone frequency (TCF) outperformed commonly used prognostic indicators of disease progression and overall survival in MF, and was particularly useful in early-stage disease. The TCF may thus help identify which MF patients in the same clinical disease stage are in fact more likely to progress to life-threatening disease.


Mycosis fungoides (MF), the most common cutaneous T cell lymphoma (CTCL) is a malignancy of skin-tropic memory T cells. Most MF cases present as early stage (stage I A/B, limited to the skin), and these patients typically have a chronic, indolent clinical course. However, a small subset of early-stage cases develop progressive and fatal disease. Because outcomes can be so different, early identification of this high-risk population is an urgent unmet clinical need. We evaluated the use of next-generation high-throughput DNA sequencing of the T cell receptor β gene (TCRB) in lesional skin biopsies to predict progression and survival in a discovery cohort of 208 patients with CTCL (177 with MF) from a 15-year longitudinal observational clinical study. We compared these data to the results in an independent validation cohort of 101 CTCL patients (87 with MF). The tumor clone frequency (TCF) in lesional skin, measured by high-throughput sequencing of the TCRB gene, was an independent prognostic factor of both progression-free and overall survival in patients with CTCL and MF in particular. In early-stage patients, a TCF of >25% in the skin was a stronger predictor of progression than any other established prognostic factor (stage IB versus IA, presence of plaques, high blood lactate dehydrogenase concentration, large-cell transformation, or age). The TCF therefore may accurately predict disease progression in early-stage MF. Early identification of patients at high risk for progression could help identify candidates who may benefit from allogeneic hematopoietic stem cell transplantation before their disease becomes treatment-refractory.

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